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Prof. Benjamin Berman

Researcher interests: Control of gene regulation in cancer, and computational methods development for genome sequencing data
FACULTY / SCHOOL: School of Medicine - IMRIC
Contact Business Development: Mel (Former Employee) Larrosa (Former Employee)
All projects by researcher: Whole-genome Nanopore sequencing to identify cell of origin and cancer-specific changes from cell-free DNA

Selected Publications

alberto luiz p reyes, benjamin p berman, Benjamin Berman, brian d davis, dennis j hazelett, jasmine plummer, kate lawrenson, michelle r jones, simon a gayther, simon g coetzee, stephanie chen, tiago c silva
genavi a shiny web application for gene expression normalization analysis and visualization (2019)| BMC Genomics| Read more
alexander gusev, benjamin p berman, Benjamin Berman, beth y karlan, david g huntsman, dennis j hazelett, jenny lester, jiheui seo, kate lawrenson, matthew l freedman, paulette mhawechfauceglia, rosario i corona, simon a gayther, sohrab p shah, xianzhi lin
abstract ap11 identifying functional noncoding somatic mutations in ovarian cancer (2019)| Clinical Cancer Research| Read more
anand mayakonda, angele peifern koh, benjamin p berman, Benjamin Berman, dechen lin, h phillip koeffler, henry yang, jinfen xiao, jonathan w said, lingwen ding, meishi yeo, nachiyappan venkatachalam, ngan b doan, pavithra shyamsunder, pushkar dakle, qiaoyang sun, ruby yunju huang, siqin zhou, sooyong tan, tiago c silva, xinyi loh, xuebin ran
rna binding protein zfp36l1 suppresses hypoxia and cell cycle signaling (2019)| Cancer Research| Read more
benjamin p berman, Benjamin Berman, dechen lin, h phillip koeffler, henry yang, jasmine plummer, jian pan, jonathan w said, kevin m waters, li chen, lingwen ding, moli huang, ngan b doan, nicole gull, omer an, qian yang, richard tuli, samuel j klempner, simon a gayther, stephanie chen, stephen j meltzer, tiago c silva, winand n m dinjens, yan yi jiang, yulan cheng
master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma (2019)| Gut| Read more
a gordon robertson, anab kemal, andrew d cherniack, andrew j mungall, benjamin p berman, Benjamin Berman, daniela s gerhard, david i heiman, denise brooks, galen f gao, han liang, hu chen, hui shen, ina felau, jean c zenklusen, joel s parker, john a demchok, katherine a hoadley, kyle m hernandez, li ding, liangbo wang, liming yang, matthew a wyczalkowski, matthew bailey, michael k a mensah, michael s noble, peter w laird, rehan akbani, reyka jayasinghe, roy tarnuzzer, saianand balu, sharon gaheen, sheila reynolds, theo knijnenburg, tiago c silva, wanding zhou, zhenyu zhang, zhining wang
before and after comparison of legacy and harmonized tcga genomic data commons data (2019)| Cell systems| Read more
benjamin p berman, Benjamin Berman, dechen lin, dennis j hazelett, houtan noushmehr, lijing yao, nicole gull, simon g coetzee, tiago c silva
elmer v 2 an r bioconductor package to reconstruct gene regulatory networks from dna methylation and transcriptome profiles (2019)| Bioinformatics| Read more
aleksandr stotland, benjamin p berman, Benjamin Berman, christie l hunter, erin l crowgey, jennifer e van eyk, justyna fertbober, rakhi pandey, ronald j holewinski, ruining liu, vidya venkatraman
mapping citrullinated sites in multiple organs of mice using hypercitrullinated library (2019)| Journal of Proteome Research| Read more
anand mayakonda, benjamin p berman, Benjamin Berman, brendan pang, dechen lin, dong yin, h phillip koeffler, jianjun xie, jinsong li, jonathan w said, kaishun hu, lehang lin, li chen, moli huang, ngan b doan, sigal gery, xianping shi, xiao guo, xu cheng, yanyi jiang, zhaoyu lin
super enhancer associated meis1 promotes transcriptional dysregulation in ewing sarcoma in co operation with ews fli1 (2019)| Nucleic Acids Research| Read more
alexander gusev, benjamin p berman, Benjamin Berman, beth y karlan, david g huntsman, dennis j hazelett, forough abassi, jenny lester, jessica reddy, jiheui seo, kate lawrenson, matthew l freedman, paulette mhawechfauceglia, rosario i corona, simon a gayther, sohrab p shah, xianzhi lin, yvonne g lin
non coding somatic mutations converge on the pax8 pathway in epithelial ovarian cancer (2019)| bioRxiv| Read more
benjamin p berman, Benjamin Berman, beth y karlan, david g huntsman, dennis j hazelett, jenny lester, jiheui seo, kate lawrenson, matthew l freedman, paulette mhawechfauceglia, rosario i corona, simon a gayther, sohrab p shah, xianzhi lin
abstract 395 identifying the functional drivers of noncoding somatic mutations in ovarian cancer (2018)| Molecular and Cellular Biology / Genetics| Read more

Contact for more information:

Mel (Former Employee) Larrosa (Former Employee)
VP Business Development Healthcare
+972-2-6586692
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