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Prof. Nir Friedman

Researcher interests: Systems Biology of Transcription and Chromatin, Transcription regulation, Chromatin modifications, systematic yeast genetics.
FACULTY / SCHOOL: Faculty of Science
Contact Business Development: Keren-Or Amar
All projects by researcher: High-Throughput Sequencing Methods to Test Samples
Computational Biology (6)Systems Biology (4)Epigenetics (3)Chromatin (2)Transcription (1)

Selected Publications

Aviv Regev, carl g de boer, eeshit dhaval vaishnav, esteban luis abeyta, Nir Friedman, ronen sadeh
deciphering eukaryotic gene regulatory logic with 100 million random promoters (2019)| Nature Biotechnology| Read more
Nir Friedman, Mor Nitzan, nikolaus rajewsky, nikos karaiskos
gene expression cartography (2019)| Nature| Read more
Nir Friedman, jeffrey brent, mirit shoshanilevy, paul m wax, sharan l campleman, yaron finkelstein
fatalities in poisoned patients managed by medical toxicologists (2019)| Clinical Toxicology| Read more
amit sadeh, daphna josephstrauss, eli shalom, Nir Friedman, jenia gutin
genetic screen of the yeast environmental stress response dynamics uncovers distinct regulatory phases (2019)| Molecular Systems Biology| Read more
aviad zick, Ayelet Rahat, benjamin glaser, daniel neiman, david planer, dayana yaish, Yuval Dor , eithan galun, Nir Friedman, gavriel fialkoff, guy meler, ilana foxfisher, israa sharkia, Tomer Kaplan, Mor Nitzan, ronen sadeh, ruth shemer, samir abugazala, zahala kamari
chip seq of plasma cell free nucleosomes identifies cell of origin gene expression programs (2019)| bioRxiv| Read more
Nir Friedman, Mor Nitzan, nikolaus rajewsky, nikos karaiskos
inferring geometric embeddings for single cell data (2019)| Bulletin of the American Physical Society| Read more
alon appleboim, avital kleinbrill, daphna josephstrauss, Nir Friedman
dynamics of chromatin and transcription during transient depletion of the rsc chromatin remodeling complex (2019)| Cell Reports| Read more
Nir Friedman, Mor Nitzan, nikolaus rajewsky, nikos karaiskos
charting a tissue from single cell transcriptomes (2018)| bioRxiv| Read more
Nir Friedman, jenia gutin, maya schuldiner, meytal radzinski, nadav shai, Yaakov Nahmias, Ohad Yogev, Tomer Ravid, Dana Reichmann, rosi fassler, sabina tsytkinkirschenzweig, sidra ilyas, William Breuer, yifat geffen
temporal profiling of redox dependent heterogeneity in single cells (2018)| eLife| Read more
Nir Friedman, jenia gutin, maya schuldiner, meytal radzinski, nadav shai, Yaakov Nahmias, Ohad Yogev, Tomer Ravid, Dana Reichmann, rosi fassler, sabina tsytkinkirschenzweig, sidra ilyas, William Breuer, yifat geffen
author response temporal profiling of redox dependent heterogeneity in single cells (2018)| | Read more
adi alajem, avital kleinbrill, daphna josephstrauss, Nir Friedman, jenia gutin, nitzan bodenheimer, Oren RAM, ronen sadeh
fine resolution mapping of tf binding and chromatin interactions (2018)| Cell Reports| Read more
Basak E Uygun, Daniel Kitsberg, david bomze, elishai ezra, ella h sklan, Nir Friedman, Gahl Levy, Naomi Habib, j timm, joerg f schlaak, korkut uygun, m trippler, maria angela guzzardi, Merav Cohen, Yaakov Nahmias, oren shibolet
nuclear receptors control pro viral and antiviral metabolic responses to hepatitis c virus infection (2016)| Nature Chemical Biology| Read more
atray dixit, Aviv Regev, biyu li, britt adamson, charles p fulco, danielle dionne, eric s lander, Nir Friedman, jenny x chen, jonathan s weissman, livnat jerbyarnon, nemanja d marjanovic, Oren Parnas, raktima raychowdhury, thomas m norman, tyler burks
perturb seq dissecting molecular circuits with scalable single cell rna profiling of pooled genetic screens (2016)| Cell| Read more
atray dixit, Aviv Regev, biyu li, britt adamson, charles p fulco, danielle dionne, eric s lander, Nir Friedman, jenny x chen, jonathan s weissman, livnat jerbyarnon, nemanja d marjanovic, Oren Parnas, raktima raychowdhury, thomas m norman, tyler burks
perturb seq dissecting molecular circuits with scalable single cell rna profiling of pooled genetic screens (2016)| PMC| Read more
alexander f schier, andrea pauli, Aviv Regev, deborah j stumpo, Nir Friedman, Ido Amit, marko jovanovic, michael s rooney, nir hacohen, perry j blackshear, Michal Rabani, raktima raychowdhury
high resolution sequencing and modeling identifies distinct dynamic rna regulatory strategies (2014)| PMC| Read more
alexander f schier, andrea pauli, Aviv Regev, deborah j stumpo, Nir Friedman, Ido Amit, marko jovanovic, michael s rooney, nir hacohen, perry j blackshear, Michal Rabani, raktima raychowdhury
high resolution sequencing and modeling identifies distinct dynamic rna regulatory strategies (2014)| Cell| Read more
Alon Goren, andreas gnirke, anne thielke, assaf weiner, Aviv Regev, bang wong, bradley e bernstein, brian minie, chad nusbaum, chamutal bornstein, christine s cheng, daniela amannzalcenstein, dennis friedrich, Nir Friedman, Ido Amit, james c meldrim, james t robinson, Manuel Garber, mitchell guttman, nicolas chevrier, nir hacohen, Nir Yosef, raktima raychowdhury, Oren RAM, ronnie blechergonen, sheila fisher, zohar itzhaki
a high throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals (2012)| Molecular Cell| Read more
Alon Goren, andreas gnirke, anne thielke, assaf weiner, Aviv Regev, bang wong, bradley e bernstein, brian minie, chad nusbaum, chamutal bornstein, christine s cheng, daniela amannzalcenstein, dennis friedrich, Nir Friedman, Ido Amit, james c meldrim, james robinson, Manuel Garber, mitchell guttman, nicolas chevrier, nir hacohen, Nir Yosef, raktima raychowdhury, Oren RAM, ronnie blechergonen, sheila fisher, zohar itzhaki
a high throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals (2012)| Elsevier| Read more
andreas gnirke, Aviv Regev, chad nusbaum, Nir Friedman, Ido Amit, joshua z levin, lin fan, Manuel Garber, nir hacohen, Michal Rabani, raktima raychowdhury, xian adiconis
metabolic labeling of rna uncovers principles of rna production and degradation dynamics in mammalian cells (2011)| Nature Biotechnology| Read more
andreas gnirke, Aviv Regev, chad nusbaum, Nir Friedman, Ido Amit, joshua z levin, lin fan, Manuel Garber, nir hacohen, Michal Rabani, raktima raychowdhury, xian adiconis
metabolic labeling of rna uncovers principles of rna production and degradation dynamics in mammalian cells (2011)| PMC| Read more

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